How To Install r-cran-treescape on Debian 12
Introduction
In this tutorial we learn how to install r-cran-treescape on Debian 12.
What is r-cran-treescape
r-cran-treescape is:
This GNU R package provides tools for the exploration of distributions of phylogenetic trees. This package includes a shiny interface which can be started from R using ’treescapeServer()'.
There are three methods to install r-cran-treescape on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-cran-treescape Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-cran-treescape using apt-get by running the following command:
sudo apt-get -y install r-cran-treescape
Install r-cran-treescape Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-cran-treescape using apt by running the following command:
sudo apt -y install r-cran-treescape
Install r-cran-treescape Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-cran-treescape using aptitude by running the following command:
sudo aptitude -y install r-cran-treescape
How To Uninstall r-cran-treescape on Debian 12
To uninstall only the r-cran-treescape package we can use the following command:
sudo apt-get remove r-cran-treescape
Uninstall r-cran-treescape And Its Dependencies
To uninstall r-cran-treescape and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-cran-treescape
Remove r-cran-treescape Configurations and Data
To remove r-cran-treescape configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-cran-treescape
Remove r-cran-treescape configuration, data, and all of its dependencies
We can use the following command to remove r-cran-treescape configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-cran-treescape
Dependencies
r-cran-treescape have the following dependencies:
- r-base-core
- r-api-4.0
- r-cran-ape
- r-cran-ade4
- r-cran-adegenet
- r-cran-adegraphics
- r-cran-adephylo
- r-cran-combinat
- r-cran-distory
- r-cran-fields
- r-cran-htmlwidgets
- r-cran-mass
- r-cran-phangorn
- r-cran-rcpp
- r-cran-rgl
- r-cran-rlumshiny
- r-cran-scatterd3
- r-cran-shiny
- r-cran-shinybs
- libc6
- libgcc-s1
- libstdc++6
References
Summary
In this tutorial we learn how to install r-cran-treescape package on Debian 12 using different package management tools: apt, apt-get and aptitude.
