How To Install r-cran-seuratobject on Kali Linux

In this tutorial we learn how to install r-cran-seuratobject on Kali Linux. r-cran-seuratobject is GNU R data structures for single cell data

Introduction

In this tutorial we learn how to install r-cran-seuratobject on Kali Linux.

What is r-cran-seuratobject

r-cran-seuratobject is:

Defines S4 classes for single-cell genomic data and associated information, such as dimensionality reduction embeddings, nearest-neighbor graphs, and spatially-resolved coordinates. Provides data access methods and R-native hooks to ensure the Seurat object is familiar to other R users. See Satija R, Farrell J, Gennert D, et al (2015) doi:10.1038/nbt.3192, Macosko E, Basu A, Satija R, et al (2015) doi:10.1016/j.cell.2015.05.002, and Stuart T, Butler A, et al (2019) doi:10.1016/j.cell.2019.05.031 for more details.

There are three methods to install r-cran-seuratobject on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-cran-seuratobject Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-cran-seuratobject using apt-get by running the following command:

sudo apt-get -y install r-cran-seuratobject

Install r-cran-seuratobject Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-cran-seuratobject using apt by running the following command:

sudo apt -y install r-cran-seuratobject

Install r-cran-seuratobject Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-cran-seuratobject using aptitude by running the following command:

sudo aptitude -y install r-cran-seuratobject

How To Uninstall r-cran-seuratobject on Kali Linux

To uninstall only the r-cran-seuratobject package we can use the following command:

sudo apt-get remove r-cran-seuratobject

Uninstall r-cran-seuratobject And Its Dependencies

To uninstall r-cran-seuratobject and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove r-cran-seuratobject

Remove r-cran-seuratobject Configurations and Data

To remove r-cran-seuratobject configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge r-cran-seuratobject

Remove r-cran-seuratobject configuration, data, and all of its dependencies

We can use the following command to remove r-cran-seuratobject configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-cran-seuratobject

Dependencies

r-cran-seuratobject have the following dependencies:

References

Summary

In this tutorial we learn how to install r-cran-seuratobject package on Kali Linux using different package management tools: apt, apt-get and aptitude.