How To Install r-cran-sctransform on Kali Linux
Introduction
In this tutorial we learn how to install r-cran-sctransform
on Kali Linux.
What is r-cran-sctransform
r-cran-sctransform is:
A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction. See Hafemeister and Satija 2019 doi:10.1101/576827 for more details.
There are three methods to install r-cran-sctransform
on Kali Linux. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install r-cran-sctransform Using apt-get
Update apt database with apt-get
using the following command.
After updating apt database, We can install r-cran-sctransform
using apt-get
by running the following command:
Install r-cran-sctransform Using apt
Update apt database with apt
using the following command.
After updating apt database, We can install r-cran-sctransform
using apt
by running the following command:
Install r-cran-sctransform Using aptitude
If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude
using the following command.
After updating apt database, We can install r-cran-sctransform
using aptitude
by running the following command:
How To Uninstall r-cran-sctransform on Kali Linux
To uninstall only the r-cran-sctransform
package we can use the following command:
Uninstall r-cran-sctransform And Its Dependencies
To uninstall r-cran-sctransform
and its dependencies that are no longer needed by Kali Linux, we can use the command below:
Remove r-cran-sctransform Configurations and Data
To remove r-cran-sctransform
configuration and data from Kali Linux we can use the following command:
Remove r-cran-sctransform configuration, data, and all of its dependencies
We can use the following command to remove r-cran-sctransform
configurations, data and all of its dependencies, we can use the following command:
Dependencies
r-cran-sctransform have the following dependencies:
- r-base-core
- r-api-4.0
- r-cran-mass
- r-cran-matrix
- r-cran-future.apply
- r-cran-future
- r-cran-ggplot2
- r-cran-reshape2
- r-cran-gridextra
- r-cran-matrixstats
- r-cran-rcpparmadillo
- r-cran-rcpp
- libblas3
- libc6
- libgcc-s1
- liblapack3
- libstdc++6
References
Summary
In this tutorial we learn how to install r-cran-sctransform
package on Kali Linux using different package management tools: apt
, apt-get
and aptitude
.