How To Install r-cran-rsgcc on Ubuntu 20.04
Introduction
In this tutorial we learn how to install r-cran-rsgcc
on Ubuntu 20.04.
What is r-cran-rsgcc
r-cran-rsgcc is:
This package provides functions for calculating associations between two genes with five correlation methods(e.g., the Gini correlation coefficient [GCC], the Pearson’s product moment correlation coefficient [PCC], the Kendall tau rank correlation coefficient [KCC], the Spearman’s rank correlation coefficient [SCC] and the Tukey’s biweight correlation coefficient [BiWt], and three non-correlation methods (e.g., mutual information [MI] and the maximal information-based nonparametric exploration [MINE], and the euclidean distance [ED]). It can also been implemented to perform the correlation and clustering analysis of transcriptomic data profiled by microarray and RNA-Seq technologies. Additionally, this package can be further applied to construct gene co-expression networks (GCNs).
There are three methods to install r-cran-rsgcc
on Ubuntu 20.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install r-cran-rsgcc Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install r-cran-rsgcc
using apt-get
by running the following command:
sudo apt-get -y install r-cran-rsgcc
Install r-cran-rsgcc Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install r-cran-rsgcc
using apt
by running the following command:
sudo apt -y install r-cran-rsgcc
Install r-cran-rsgcc Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install r-cran-rsgcc
using aptitude
by running the following command:
sudo aptitude -y install r-cran-rsgcc
How To Uninstall r-cran-rsgcc on Ubuntu 20.04
To uninstall only the r-cran-rsgcc
package we can use the following command:
sudo apt-get remove r-cran-rsgcc
Uninstall r-cran-rsgcc And Its Dependencies
To uninstall r-cran-rsgcc
and its dependencies that are no longer needed by Ubuntu 20.04, we can use the command below:
sudo apt-get -y autoremove r-cran-rsgcc
Remove r-cran-rsgcc Configurations and Data
To remove r-cran-rsgcc
configuration and data from Ubuntu 20.04 we can use the following command:
sudo apt-get -y purge r-cran-rsgcc
Remove r-cran-rsgcc configuration, data, and all of its dependencies
We can use the following command to remove r-cran-rsgcc
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-cran-rsgcc
References
Summary
In this tutorial we learn how to install r-cran-rsgcc
package on Ubuntu 20.04 using different package management tools: apt
, apt-get
and aptitude
.