How To Install r-cran-pscbs on Debian 12
Introduction
In this tutorial we learn how to install r-cran-pscbs
on Debian 12.
What is r-cran-pscbs
r-cran-pscbs is:
Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumoronly analyses are supported.
There are three methods to install r-cran-pscbs
on Debian 12. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install r-cran-pscbs Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install r-cran-pscbs
using apt-get
by running the following command:
sudo apt-get -y install r-cran-pscbs
Install r-cran-pscbs Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install r-cran-pscbs
using apt
by running the following command:
sudo apt -y install r-cran-pscbs
Install r-cran-pscbs Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install r-cran-pscbs
using aptitude
by running the following command:
sudo aptitude -y install r-cran-pscbs
How To Uninstall r-cran-pscbs on Debian 12
To uninstall only the r-cran-pscbs
package we can use the following command:
sudo apt-get remove r-cran-pscbs
Uninstall r-cran-pscbs And Its Dependencies
To uninstall r-cran-pscbs
and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-cran-pscbs
Remove r-cran-pscbs Configurations and Data
To remove r-cran-pscbs
configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-cran-pscbs
Remove r-cran-pscbs configuration, data, and all of its dependencies
We can use the following command to remove r-cran-pscbs
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-cran-pscbs
Dependencies
r-cran-pscbs have the following dependencies:
- r-base-core
- r-api-4.0
- r-cran-r.methodss3
- r-cran-r.oo
- r-cran-r.utils
- r-cran-r.cache
- r-cran-matrixstats
- r-bioc-aroma.light
- r-bioc-dnacopy
- r-cran-listenv
- r-cran-future
References
Summary
In this tutorial we learn how to install r-cran-pscbs
package on Debian 12 using different package management tools: apt
, apt-get
and aptitude
.