How To Install r-cran-metamix on Debian 12
Introduction
In this tutorial we learn how to install r-cran-metamix on Debian 12.
What is r-cran-metamix
r-cran-metamix is:
Resolves complex metagenomic mixtures by analysing deep sequencing data, using a mixture model based approach. The use of parallel Monte Carlo Markov chains for the exploration of the species space enables the identification of the set of species more likely to contribute to the mixture.
There are three methods to install r-cran-metamix on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-cran-metamix Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-cran-metamix using apt-get by running the following command:
sudo apt-get -y install r-cran-metamix
Install r-cran-metamix Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-cran-metamix using apt by running the following command:
sudo apt -y install r-cran-metamix
Install r-cran-metamix Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-cran-metamix using aptitude by running the following command:
sudo aptitude -y install r-cran-metamix
How To Uninstall r-cran-metamix on Debian 12
To uninstall only the r-cran-metamix package we can use the following command:
sudo apt-get remove r-cran-metamix
Uninstall r-cran-metamix And Its Dependencies
To uninstall r-cran-metamix and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-cran-metamix
Remove r-cran-metamix Configurations and Data
To remove r-cran-metamix configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-cran-metamix
Remove r-cran-metamix configuration, data, and all of its dependencies
We can use the following command to remove r-cran-metamix configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-cran-metamix
Dependencies
r-cran-metamix have the following dependencies:
- r-base-core
- r-api-4.0
- r-cran-data.table
- r-cran-matrix
- r-cran-gtools
- r-cran-rmpi
- r-cran-ggplot2
- libc6
- libstdc++6
- libopenmpi-dev
References
Summary
In this tutorial we learn how to install r-cran-metamix package on Debian 12 using different package management tools: apt, apt-get and aptitude.
