How To Install r-cran-glmmtmb on Debian 11
Introduction
In this tutorial we learn how to install r-cran-glmmtmb
on Debian 11.
What is r-cran-glmmtmb
r-cran-glmmtmb is:
Fit linear and generalized linear mixed models with various extensions, including zero-inflation. The models are fitted using maximum likelihood estimation via ‘TMB’ (Template Model Builder). Random effects are assumed to be Gaussian on the scale of the linear predictor and are integrated out using the Laplace approximation. Gradients are calculated using automatic differentiation.
There are three methods to install r-cran-glmmtmb
on Debian 11. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install r-cran-glmmtmb Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install r-cran-glmmtmb
using apt-get
by running the following command:
sudo apt-get -y install r-cran-glmmtmb
Install r-cran-glmmtmb Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install r-cran-glmmtmb
using apt
by running the following command:
sudo apt -y install r-cran-glmmtmb
Install r-cran-glmmtmb Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install r-cran-glmmtmb
using aptitude
by running the following command:
sudo aptitude -y install r-cran-glmmtmb
How To Uninstall r-cran-glmmtmb on Debian 11
To uninstall only the r-cran-glmmtmb
package we can use the following command:
sudo apt-get remove r-cran-glmmtmb
Uninstall r-cran-glmmtmb And Its Dependencies
To uninstall r-cran-glmmtmb
and its dependencies that are no longer needed by Debian 11, we can use the command below:
sudo apt-get -y autoremove r-cran-glmmtmb
Remove r-cran-glmmtmb Configurations and Data
To remove r-cran-glmmtmb
configuration and data from Debian 11 we can use the following command:
sudo apt-get -y purge r-cran-glmmtmb
Remove r-cran-glmmtmb configuration, data, and all of its dependencies
We can use the following command to remove r-cran-glmmtmb
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-cran-glmmtmb
Dependencies
r-cran-glmmtmb have the following dependencies:
- r-base-core
- r-api-4.0
- r-cran-tmb
- r-cran-lme4
- r-cran-matrix
- r-cran-nlme
- r-cran-rcppeigen
- libc6
- libgcc-s1
- libgomp1
- libstdc++6
References
Summary
In this tutorial we learn how to install r-cran-glmmtmb
package on Debian 11 using different package management tools: apt
, apt-get
and aptitude
.