How To Install r-cran-cgdsr on Debian 12
Introduction
In this tutorial we learn how to install r-cran-cgdsr on Debian 12.
What is r-cran-cgdsr
r-cran-cgdsr is:
Provides a basic set of R functions for querying the Cancer Genomics Data Server (CGDS), hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC) at <www.cbioportal.org>.
There are three methods to install r-cran-cgdsr on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-cran-cgdsr Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-cran-cgdsr using apt-get by running the following command:
sudo apt-get -y install r-cran-cgdsr
Install r-cran-cgdsr Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-cran-cgdsr using apt by running the following command:
sudo apt -y install r-cran-cgdsr
Install r-cran-cgdsr Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-cran-cgdsr using aptitude by running the following command:
sudo aptitude -y install r-cran-cgdsr
How To Uninstall r-cran-cgdsr on Debian 12
To uninstall only the r-cran-cgdsr package we can use the following command:
sudo apt-get remove r-cran-cgdsr
Uninstall r-cran-cgdsr And Its Dependencies
To uninstall r-cran-cgdsr and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-cran-cgdsr
Remove r-cran-cgdsr Configurations and Data
To remove r-cran-cgdsr configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-cran-cgdsr
Remove r-cran-cgdsr configuration, data, and all of its dependencies
We can use the following command to remove r-cran-cgdsr configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-cran-cgdsr
Dependencies
r-cran-cgdsr have the following dependencies:
References
Summary
In this tutorial we learn how to install r-cran-cgdsr package on Debian 12 using different package management tools: apt, apt-get and aptitude.