How To Install r-cran-calibratr on Ubuntu 22.04
Introduction
In this tutorial we learn how to install r-cran-calibratr on Ubuntu 22.04.
What is r-cran-calibratr
r-cran-calibratr is:
Transforms your uncalibrated Machine Learning scores to well-calibrated prediction estimates that can be interpreted as probability estimates. The implemented BBQ (Bayes Binning in Quantiles) model is taken from Naeini (2015, ISBN:0-262-51129-0). Please cite this paper: Schwarz J and Heider D, Bioinformatics 2019, 35(14):2458-2465.
There are three methods to install r-cran-calibratr on Ubuntu 22.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-cran-calibratr Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-cran-calibratr using apt-get by running the following command:
sudo apt-get -y install r-cran-calibratr
Install r-cran-calibratr Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-cran-calibratr using apt by running the following command:
sudo apt -y install r-cran-calibratr
Install r-cran-calibratr Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-cran-calibratr using aptitude by running the following command:
sudo aptitude -y install r-cran-calibratr
How To Uninstall r-cran-calibratr on Ubuntu 22.04
To uninstall only the r-cran-calibratr package we can use the following command:
sudo apt-get remove r-cran-calibratr
Uninstall r-cran-calibratr And Its Dependencies
To uninstall r-cran-calibratr and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove r-cran-calibratr
Remove r-cran-calibratr Configurations and Data
To remove r-cran-calibratr configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge r-cran-calibratr
Remove r-cran-calibratr configuration, data, and all of its dependencies
We can use the following command to remove r-cran-calibratr configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-cran-calibratr
References
Summary
In this tutorial we learn how to install r-cran-calibratr package on Ubuntu 22.04 using different package management tools: apt, apt-get and aptitude.