How To Install r-cran-bios2cor on Ubuntu 22.04
Introduction
In this tutorial we learn how to install r-cran-bios2cor on Ubuntu 22.04.
What is r-cran-bios2cor
r-cran-bios2cor is:
Analysis Utilities for computation and analysis of correlation/covariation in multiple sequence alignments and in side chain motions during molecular dynamics simulations. Features include the computation of correlation/covariation scores using a variety of scoring functions between either sequence positions in alignments or side chain dihedral angles in molecular dynamics simulations and utilities to analyze the correlation/covariation matrix through a variety of tools including network representation and principal components analysis. In addition, several utility functions are based on the R graphical environment to provide friendly tools for help in data interpretation. Examples of sequence covariation analysis are provided in: (1) Pele J, Moreau M, Abdi H, Rodien P, Castel H, Chabbert M (2014) doi:10.1002/prot.24570 and (2) Taddese B, Deniaud M, Garnier A, Tiss A, Guissouma H, Abdi H, Henrion D, Chabbert M (2018) <doi: 10.1371/journal.pcbi.1006209>. An example of side chain correlated motion analysis is provided in: Taddese B, Garnier A, Abdi H, Henrion D, Chabbert M (2020) <doi: 10.1038/s41598-020-72766- 1>. This work was supported by the French National Research Agency (Grant number: ANR-11-BSV2-026) and by GENCI (Grant number: 100567).
There are three methods to install r-cran-bios2cor on Ubuntu 22.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-cran-bios2cor Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-cran-bios2cor using apt-get by running the following command:
sudo apt-get -y install r-cran-bios2cor
Install r-cran-bios2cor Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-cran-bios2cor using apt by running the following command:
sudo apt -y install r-cran-bios2cor
Install r-cran-bios2cor Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-cran-bios2cor using aptitude by running the following command:
sudo aptitude -y install r-cran-bios2cor
How To Uninstall r-cran-bios2cor on Ubuntu 22.04
To uninstall only the r-cran-bios2cor package we can use the following command:
sudo apt-get remove r-cran-bios2cor
Uninstall r-cran-bios2cor And Its Dependencies
To uninstall r-cran-bios2cor and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove r-cran-bios2cor
Remove r-cran-bios2cor Configurations and Data
To remove r-cran-bios2cor configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge r-cran-bios2cor
Remove r-cran-bios2cor configuration, data, and all of its dependencies
We can use the following command to remove r-cran-bios2cor configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-cran-bios2cor
References
Summary
In this tutorial we learn how to install r-cran-bios2cor package on Ubuntu 22.04 using different package management tools: apt, apt-get and aptitude.