How To Install r-cran-bio3d on Debian 9
Introduction
In this tutorial we learn how to install r-cran-bio3d on Debian 9.
What is r-cran-bio3d
r-cran-bio3d is:
The bio3d package contains utilities to process, organize and explore protein structure, sequence and dynamics data. Features include the ability to read and write structure, sequence and dynamic trajectory data, perform atom summaries, atom selection, re-orientation, superposition, rigid core identification, clustering, torsion analysis, distance matrix analysis, structure and sequence conservation analysis, and principal component analysis (PCA). In addition, various utility functions are provided to enable the statistical and graphical power of the R environment to work with biological sequence and structural data.
There are three methods to install r-cran-bio3d on Debian 9. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-cran-bio3d Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-cran-bio3d using apt-get by running the following command:
sudo apt-get -y install r-cran-bio3d
Install r-cran-bio3d Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-cran-bio3d using apt by running the following command:
sudo apt -y install r-cran-bio3d
Install r-cran-bio3d Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-cran-bio3d using aptitude by running the following command:
sudo aptitude -y install r-cran-bio3d
How To Uninstall r-cran-bio3d on Debian 9
To uninstall only the r-cran-bio3d package we can use the following command:
sudo apt-get remove r-cran-bio3d
Uninstall r-cran-bio3d And Its Dependencies
To uninstall r-cran-bio3d and its dependencies that are no longer needed by Debian 9, we can use the command below:
sudo apt-get -y autoremove r-cran-bio3d
Remove r-cran-bio3d Configurations and Data
To remove r-cran-bio3d configuration and data from Debian 9 we can use the following command:
sudo apt-get -y purge r-cran-bio3d
Remove r-cran-bio3d configuration, data, and all of its dependencies
We can use the following command to remove r-cran-bio3d configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-cran-bio3d
Dependencies
r-cran-bio3d have the following dependencies:
References
Summary
In this tutorial we learn how to install r-cran-bio3d package on Debian 9 using different package management tools: apt, apt-get and aptitude.