How To Install r-cran-ape on Kali Linux
Introduction
In this tutorial we learn how to install r-cran-ape
on Kali Linux.
What is r-cran-ape
r-cran-ape is:
This package provides functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from DNA sequences, reading and writing nucleotide sequences as well as importing from BioConductor, and several tools such as Mantel’s test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood, dating trees with non-contemporaneous sequences, translating DNA into AA sequences, and assessing sequence alignments. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are returned into R.
There are three methods to install r-cran-ape
on Kali Linux. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install r-cran-ape Using apt-get
Update apt database with apt-get
using the following command.
After updating apt database, We can install r-cran-ape
using apt-get
by running the following command:
Install r-cran-ape Using apt
Update apt database with apt
using the following command.
After updating apt database, We can install r-cran-ape
using apt
by running the following command:
Install r-cran-ape Using aptitude
If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude
using the following command.
After updating apt database, We can install r-cran-ape
using aptitude
by running the following command:
How To Uninstall r-cran-ape on Kali Linux
To uninstall only the r-cran-ape
package we can use the following command:
Uninstall r-cran-ape And Its Dependencies
To uninstall r-cran-ape
and its dependencies that are no longer needed by Kali Linux, we can use the command below:
Remove r-cran-ape Configurations and Data
To remove r-cran-ape
configuration and data from Kali Linux we can use the following command:
Remove r-cran-ape configuration, data, and all of its dependencies
We can use the following command to remove r-cran-ape
configurations, data and all of its dependencies, we can use the following command:
Dependencies
r-cran-ape have the following dependencies:
References
Summary
In this tutorial we learn how to install r-cran-ape
package on Kali Linux using different package management tools: apt
, apt-get
and aptitude
.