How To Install r-cran-adegenet on Ubuntu 18.04
Introduction
In this tutorial we learn how to install r-cran-adegenet on Ubuntu 18.04.
What is r-cran-adegenet
r-cran-adegenet is:
Toolset for the exploration of genetic and genomic data. Adegenet provides formal (S4) classes for storing and handling various genetic data, including genetic markers with varying ploidy and hierarchical population structure (‘genind’ class), alleles counts by populations (‘genpop’), and genome-wide SNP data (‘genlight’). It also implements original multivariate methods (DAPC, sPCA), graphics, statistical tests, simulation tools, distance and similarity measures, and several spatial methods. A range of both empirical and simulated datasets is also provided to illustrate various methods.
There are three methods to install r-cran-adegenet on Ubuntu 18.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-cran-adegenet Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-cran-adegenet using apt-get by running the following command:
sudo apt-get -y install r-cran-adegenet
Install r-cran-adegenet Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-cran-adegenet using apt by running the following command:
sudo apt -y install r-cran-adegenet
Install r-cran-adegenet Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-cran-adegenet using aptitude by running the following command:
sudo aptitude -y install r-cran-adegenet
How To Uninstall r-cran-adegenet on Ubuntu 18.04
To uninstall only the r-cran-adegenet package we can use the following command:
sudo apt-get remove r-cran-adegenet
Uninstall r-cran-adegenet And Its Dependencies
To uninstall r-cran-adegenet and its dependencies that are no longer needed by Ubuntu 18.04, we can use the command below:
sudo apt-get -y autoremove r-cran-adegenet
Remove r-cran-adegenet Configurations and Data
To remove r-cran-adegenet configuration and data from Ubuntu 18.04 we can use the following command:
sudo apt-get -y purge r-cran-adegenet
Remove r-cran-adegenet configuration, data, and all of its dependencies
We can use the following command to remove r-cran-adegenet configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-cran-adegenet
References
Summary
In this tutorial we learn how to install r-cran-adegenet package on Ubuntu 18.04 using different package management tools: apt, apt-get and aptitude.
