How To Install r-cran-adegenet on Kali Linux

In this tutorial we learn how to install r-cran-adegenet on Kali Linux. r-cran-adegenet is GNU R exploratory analysis of genetic and genomic data

Introduction

In this tutorial we learn how to install r-cran-adegenet on Kali Linux.

What is r-cran-adegenet

r-cran-adegenet is:

Toolset for the exploration of genetic and genomic data. Adegenet provides formal (S4) classes for storing and handling various genetic data, including genetic markers with varying ploidy and hierarchical population structure (‘genind’ class), alleles counts by populations (‘genpop’), and genome-wide SNP data (‘genlight’). It also implements original multivariate methods (DAPC, sPCA), graphics, statistical tests, simulation tools, distance and similarity measures, and several spatial methods. A range of both empirical and simulated datasets is also provided to illustrate various methods.

There are three methods to install r-cran-adegenet on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-cran-adegenet Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-cran-adegenet using apt-get by running the following command:

sudo apt-get -y install r-cran-adegenet

Install r-cran-adegenet Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-cran-adegenet using apt by running the following command:

sudo apt -y install r-cran-adegenet

Install r-cran-adegenet Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-cran-adegenet using aptitude by running the following command:

sudo aptitude -y install r-cran-adegenet

How To Uninstall r-cran-adegenet on Kali Linux

To uninstall only the r-cran-adegenet package we can use the following command:

sudo apt-get remove r-cran-adegenet

Uninstall r-cran-adegenet And Its Dependencies

To uninstall r-cran-adegenet and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove r-cran-adegenet

Remove r-cran-adegenet Configurations and Data

To remove r-cran-adegenet configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge r-cran-adegenet

Remove r-cran-adegenet configuration, data, and all of its dependencies

We can use the following command to remove r-cran-adegenet configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-cran-adegenet

Dependencies

r-cran-adegenet have the following dependencies:

References

Summary

In this tutorial we learn how to install r-cran-adegenet package on Kali Linux using different package management tools: apt, apt-get and aptitude.