How To Install r-bioc-titancna on Kali Linux

In this tutorial we learn how to install r-bioc-titancna on Kali Linux. r-bioc-titancna is Subclonal copy number and LOH prediction from whole genome sequencing

Introduction

In this tutorial we learn how to install r-bioc-titancna on Kali Linux.

What is r-bioc-titancna

r-bioc-titancna is:

Hidden Markov model to segment and predict regions of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH), and estimate cellular prevalence of clonal clusters in tumour whole genome sequencing data.

There are three methods to install r-bioc-titancna on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-bioc-titancna Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-bioc-titancna using apt-get by running the following command:

sudo apt-get -y install r-bioc-titancna

Install r-bioc-titancna Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-bioc-titancna using apt by running the following command:

sudo apt -y install r-bioc-titancna

Install r-bioc-titancna Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-bioc-titancna using aptitude by running the following command:

sudo aptitude -y install r-bioc-titancna

How To Uninstall r-bioc-titancna on Kali Linux

To uninstall only the r-bioc-titancna package we can use the following command:

sudo apt-get remove r-bioc-titancna

Uninstall r-bioc-titancna And Its Dependencies

To uninstall r-bioc-titancna and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove r-bioc-titancna

Remove r-bioc-titancna Configurations and Data

To remove r-bioc-titancna configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge r-bioc-titancna

Remove r-bioc-titancna configuration, data, and all of its dependencies

We can use the following command to remove r-bioc-titancna configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-bioc-titancna

Dependencies

r-bioc-titancna have the following dependencies:

References

Summary

In this tutorial we learn how to install r-bioc-titancna package on Kali Linux using different package management tools: apt, apt-get and aptitude.