How To Install r-bioc-titancna on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-titancna on Debian 12.
What is r-bioc-titancna
r-bioc-titancna is:
Hidden Markov model to segment and predict regions of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH), and estimate cellular prevalence of clonal clusters in tumour whole genome sequencing data.
There are three methods to install r-bioc-titancna on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-titancna Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-titancna using apt-get by running the following command:
sudo apt-get -y install r-bioc-titancna
Install r-bioc-titancna Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-titancna using apt by running the following command:
sudo apt -y install r-bioc-titancna
Install r-bioc-titancna Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-titancna using aptitude by running the following command:
sudo aptitude -y install r-bioc-titancna
How To Uninstall r-bioc-titancna on Debian 12
To uninstall only the r-bioc-titancna package we can use the following command:
sudo apt-get remove r-bioc-titancna
Uninstall r-bioc-titancna And Its Dependencies
To uninstall r-bioc-titancna and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-titancna
Remove r-bioc-titancna Configurations and Data
To remove r-bioc-titancna configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-titancna
Remove r-bioc-titancna configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-titancna configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-titancna
Dependencies
r-bioc-titancna have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.16
- r-bioc-biocgenerics
- r-bioc-iranges
- r-bioc-genomicranges
- r-bioc-variantannotation
- r-cran-foreach
- r-bioc-genomeinfodb
- r-cran-data.table
- r-cran-dplyr
- libc6
References
Summary
In this tutorial we learn how to install r-bioc-titancna package on Debian 12 using different package management tools: apt, apt-get and aptitude.
