How To Install r-bioc-summarizedexperiment on Kali Linux

Introduction

In this tutorial we learn how to install r-bioc-summarizedexperiment on Kali Linux.

What is r-bioc-summarizedexperiment

r-bioc-summarizedexperiment is:

The SummarizedExperiment container contains one or more assays, each represented by a matrix-like object of numeric or other mode. The rows typically represent genomic ranges of interest and the columns represent samples.

There are three methods to install r-bioc-summarizedexperiment on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-bioc-summarizedexperiment Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-bioc-summarizedexperiment using apt-get by running the following command:

sudo apt-get -y install r-bioc-summarizedexperiment

Install r-bioc-summarizedexperiment Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-bioc-summarizedexperiment using apt by running the following command:

sudo apt -y install r-bioc-summarizedexperiment

Install r-bioc-summarizedexperiment Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-bioc-summarizedexperiment using aptitude by running the following command:

sudo aptitude -y install r-bioc-summarizedexperiment

How To Uninstall r-bioc-summarizedexperiment on Kali Linux

To uninstall only the r-bioc-summarizedexperiment package we can use the following command:

sudo apt-get remove r-bioc-summarizedexperiment

Uninstall r-bioc-summarizedexperiment And Its Dependencies

To uninstall r-bioc-summarizedexperiment and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove r-bioc-summarizedexperiment

Remove r-bioc-summarizedexperiment Configurations and Data

To remove r-bioc-summarizedexperiment configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge r-bioc-summarizedexperiment

Remove r-bioc-summarizedexperiment configuration, data, and all of its dependencies

We can use the following command to remove r-bioc-summarizedexperiment configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-bioc-summarizedexperiment

Dependencies

r-bioc-summarizedexperiment have the following dependencies:

• r-base-core
• r-api-4.0
• r-api-bioc-3.12
• r-bioc-matrixgenerics
• r-bioc-genomicranges
• r-bioc-biobase
• r-cran-matrix
• r-bioc-biocgenerics
• r-bioc-s4vectors
• r-bioc-iranges
• r-bioc-genomeinfodb
• r-bioc-delayedarray

References

• r-bioc-summarizedexperiment website

Summary

In this tutorial we learn how to install r-bioc-summarizedexperiment package on Kali Linux using different package management tools: apt, apt-get and aptitude.