How To Install r-bioc-summarizedexperiment on Debian 9
Introduction
In this tutorial we learn how to install r-bioc-summarizedexperiment
on Debian 9.
What is r-bioc-summarizedexperiment
r-bioc-summarizedexperiment is:
The SummarizedExperiment container contains one or more assays, each represented by a matrix-like object of numeric or other mode. The rows typically represent genomic ranges of interest and the columns represent samples.
There are three methods to install r-bioc-summarizedexperiment
on Debian 9. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-summarizedexperiment Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-summarizedexperiment
using apt-get
by running the following command:
sudo apt-get -y install r-bioc-summarizedexperiment
Install r-bioc-summarizedexperiment Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install r-bioc-summarizedexperiment
using apt
by running the following command:
sudo apt -y install r-bioc-summarizedexperiment
Install r-bioc-summarizedexperiment Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-summarizedexperiment
using aptitude
by running the following command:
sudo aptitude -y install r-bioc-summarizedexperiment
How To Uninstall r-bioc-summarizedexperiment on Debian 9
To uninstall only the r-bioc-summarizedexperiment
package we can use the following command:
sudo apt-get remove r-bioc-summarizedexperiment
Uninstall r-bioc-summarizedexperiment And Its Dependencies
To uninstall r-bioc-summarizedexperiment
and its dependencies that are no longer needed by Debian 9, we can use the command below:
sudo apt-get -y autoremove r-bioc-summarizedexperiment
Remove r-bioc-summarizedexperiment Configurations and Data
To remove r-bioc-summarizedexperiment
configuration and data from Debian 9 we can use the following command:
sudo apt-get -y purge r-bioc-summarizedexperiment
Remove r-bioc-summarizedexperiment configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-summarizedexperiment
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-summarizedexperiment
Dependencies
r-bioc-summarizedexperiment have the following dependencies:
- r-base-core
- r-api-3
- r-bioc-genomicranges
- r-bioc-biobase
- r-cran-matrix
- r-bioc-biocgenerics
- r-bioc-s4vectors
- r-bioc-iranges
- r-bioc-genomeinfodb
References
Summary
In this tutorial we learn how to install r-bioc-summarizedexperiment
package on Debian 9 using different package management tools: apt
, apt-get
and aptitude
.