How To Install r-bioc-stringdb on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-stringdb on Debian 12.
What is r-bioc-stringdb
r-bioc-stringdb is:
The STRINGdb package provides a R interface to the STRING protein-protein interactions database.
The original database is accessible on https://www.string-db.org.
There are three methods to install r-bioc-stringdb on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-stringdb Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-stringdb using apt-get by running the following command:
sudo apt-get -y install r-bioc-stringdb
Install r-bioc-stringdb Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-stringdb using apt by running the following command:
sudo apt -y install r-bioc-stringdb
Install r-bioc-stringdb Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-stringdb using aptitude by running the following command:
sudo aptitude -y install r-bioc-stringdb
How To Uninstall r-bioc-stringdb on Debian 12
To uninstall only the r-bioc-stringdb package we can use the following command:
sudo apt-get remove r-bioc-stringdb
Uninstall r-bioc-stringdb And Its Dependencies
To uninstall r-bioc-stringdb and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-stringdb
Remove r-bioc-stringdb Configurations and Data
To remove r-bioc-stringdb configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-stringdb
Remove r-bioc-stringdb configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-stringdb configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-stringdb
Dependencies
r-bioc-stringdb have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.16
- r-cran-png
- r-cran-sqldf
- r-cran-plyr
- r-cran-igraph
- r-cran-rcurl
- r-cran-rcolorbrewer
- r-cran-gplots
- r-cran-hash
- r-cran-plotrix
References
Summary
In this tutorial we learn how to install r-bioc-stringdb package on Debian 12 using different package management tools: apt, apt-get and aptitude.
