How To Install r-bioc-singler on Kali Linux

In this tutorial we learn how to install r-bioc-singler on Kali Linux. r-bioc-singler is BioConductor reference-based single-cell RNA-Seq annotation

Introduction

In this tutorial we learn how to install r-bioc-singler on Kali Linux.

What is r-bioc-singler

r-bioc-singler is:

Performs unbiased cell type recognition from single-cell RNA sequencing data, by leveraging reference transcriptomic datasets of pure cell types to infer the cell of origin of each single cell independently.

There are three methods to install r-bioc-singler on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-bioc-singler Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-bioc-singler using apt-get by running the following command:

sudo apt-get -y install r-bioc-singler

Install r-bioc-singler Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-bioc-singler using apt by running the following command:

sudo apt -y install r-bioc-singler

Install r-bioc-singler Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-bioc-singler using aptitude by running the following command:

sudo aptitude -y install r-bioc-singler

How To Uninstall r-bioc-singler on Kali Linux

To uninstall only the r-bioc-singler package we can use the following command:

sudo apt-get remove r-bioc-singler

Uninstall r-bioc-singler And Its Dependencies

To uninstall r-bioc-singler and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove r-bioc-singler

Remove r-bioc-singler Configurations and Data

To remove r-bioc-singler configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge r-bioc-singler

Remove r-bioc-singler configuration, data, and all of its dependencies

We can use the following command to remove r-bioc-singler configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-bioc-singler

Dependencies

r-bioc-singler have the following dependencies:

References

Summary

In this tutorial we learn how to install r-bioc-singler package on Kali Linux using different package management tools: apt, apt-get and aptitude.