How To Install r-bioc-scrnaseq on Kali Linux

Introduction

In this tutorial we learn how to install r-bioc-scrnaseq on Kali Linux.

What is r-bioc-scrnaseq

r-bioc-scrnaseq is:

Gene-level counts for a collection of public scRNA-seq datasets, provided as SingleCellExperiment objects with cell- and gene-level metadata.

There are three methods to install r-bioc-scrnaseq on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-bioc-scrnaseq Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-bioc-scrnaseq using apt-get by running the following command:

sudo apt-get -y install r-bioc-scrnaseq

Install r-bioc-scrnaseq Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-bioc-scrnaseq using apt by running the following command:

sudo apt -y install r-bioc-scrnaseq

Install r-bioc-scrnaseq Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-bioc-scrnaseq using aptitude by running the following command:

sudo aptitude -y install r-bioc-scrnaseq

How To Uninstall r-bioc-scrnaseq on Kali Linux

To uninstall only the r-bioc-scrnaseq package we can use the following command:

sudo apt-get remove r-bioc-scrnaseq

Uninstall r-bioc-scrnaseq And Its Dependencies

To uninstall r-bioc-scrnaseq and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove r-bioc-scrnaseq

Remove r-bioc-scrnaseq Configurations and Data

To remove r-bioc-scrnaseq configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge r-bioc-scrnaseq

Remove r-bioc-scrnaseq configuration, data, and all of its dependencies

We can use the following command to remove r-bioc-scrnaseq configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-bioc-scrnaseq

Dependencies

r-bioc-scrnaseq have the following dependencies:

• r-base-core
• r-api-4.0
• r-api-bioc-3.12
• r-bioc-singlecellexperiment
• r-bioc-biocgenerics
• r-bioc-s4vectors
• r-bioc-genomicranges
• r-bioc-summarizedexperiment
• r-bioc-experimenthub
• r-bioc-annotationhub
• r-bioc-annotationdbi
• r-bioc-ensembldb
• r-bioc-genomicfeatures

References

• r-bioc-scrnaseq website

Summary

In this tutorial we learn how to install r-bioc-scrnaseq package on Kali Linux using different package management tools: apt, apt-get and aptitude.