How To Install r-bioc-scater on Kali Linux

In this tutorial we learn how to install r-bioc-scater on Kali Linux. r-bioc-scater is Single-Cell Analysis Toolkit for Gene Expression Data in R

Introduction

In this tutorial we learn how to install r-bioc-scater on Kali Linux.

What is r-bioc-scater

r-bioc-scater is:

A collection of tools for doing various analyses of single-cell RNA-seq gene expression data, with a focus on quality control and visualization.

There are three methods to install r-bioc-scater on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-bioc-scater Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-bioc-scater using apt-get by running the following command:

sudo apt-get -y install r-bioc-scater

Install r-bioc-scater Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-bioc-scater using apt by running the following command:

sudo apt -y install r-bioc-scater

Install r-bioc-scater Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-bioc-scater using aptitude by running the following command:

sudo aptitude -y install r-bioc-scater

How To Uninstall r-bioc-scater on Kali Linux

To uninstall only the r-bioc-scater package we can use the following command:

sudo apt-get remove r-bioc-scater

Uninstall r-bioc-scater And Its Dependencies

To uninstall r-bioc-scater and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove r-bioc-scater

Remove r-bioc-scater Configurations and Data

To remove r-bioc-scater configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge r-bioc-scater

Remove r-bioc-scater configuration, data, and all of its dependencies

We can use the following command to remove r-bioc-scater configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-bioc-scater

Dependencies

r-bioc-scater have the following dependencies:

References

Summary

In this tutorial we learn how to install r-bioc-scater package on Kali Linux using different package management tools: apt, apt-get and aptitude.