How To Install r-bioc-savr on Debian 11
Introduction
In this tutorial we learn how to install r-bioc-savr on Debian 11.
What is r-bioc-savr
r-bioc-savr is:
This BioConductor module enables to parse Illumina Sequence Analysis Viewer (SAV) files, access data, and generate QC plots.
There are three methods to install r-bioc-savr on Debian 11. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-savr Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-savr using apt-get by running the following command:
sudo apt-get -y install r-bioc-savr
Install r-bioc-savr Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-savr using apt by running the following command:
sudo apt -y install r-bioc-savr
Install r-bioc-savr Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-savr using aptitude by running the following command:
sudo aptitude -y install r-bioc-savr
How To Uninstall r-bioc-savr on Debian 11
To uninstall only the r-bioc-savr package we can use the following command:
sudo apt-get remove r-bioc-savr
Uninstall r-bioc-savr And Its Dependencies
To uninstall r-bioc-savr and its dependencies that are no longer needed by Debian 11, we can use the command below:
sudo apt-get -y autoremove r-bioc-savr
Remove r-bioc-savr Configurations and Data
To remove r-bioc-savr configuration and data from Debian 11 we can use the following command:
sudo apt-get -y purge r-bioc-savr
Remove r-bioc-savr configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-savr configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-savr
Dependencies
r-bioc-savr have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.12
- r-cran-ggplot2
- r-cran-reshape2
- r-cran-scales
- r-cran-gridextra
- r-cran-xml
References
Summary
In this tutorial we learn how to install r-bioc-savr package on Debian 11 using different package management tools: apt, apt-get and aptitude.