How To Install r-bioc-rsubread on Kali Linux

In this tutorial we learn how to install r-bioc-rsubread on Kali Linux. r-bioc-rsubread is Subread Sequence Alignment and Counting for R

Introduction

In this tutorial we learn how to install r-bioc-rsubread on Kali Linux.

What is r-bioc-rsubread

r-bioc-rsubread is:

Alignment, quantification and analysis of second and third generation sequencing data. Includes functionality for read mapping, read counting, SNP calling, structural variant detection and gene fusion discovery.

Can be applied to all major sequencing techologies and to both short and long sequence reads.

There are three methods to install r-bioc-rsubread on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-bioc-rsubread Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-bioc-rsubread using apt-get by running the following command:

sudo apt-get -y install r-bioc-rsubread

Install r-bioc-rsubread Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-bioc-rsubread using apt by running the following command:

sudo apt -y install r-bioc-rsubread

Install r-bioc-rsubread Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-bioc-rsubread using aptitude by running the following command:

sudo aptitude -y install r-bioc-rsubread

How To Uninstall r-bioc-rsubread on Kali Linux

To uninstall only the r-bioc-rsubread package we can use the following command:

sudo apt-get remove r-bioc-rsubread

Uninstall r-bioc-rsubread And Its Dependencies

To uninstall r-bioc-rsubread and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove r-bioc-rsubread

Remove r-bioc-rsubread Configurations and Data

To remove r-bioc-rsubread configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge r-bioc-rsubread

Remove r-bioc-rsubread configuration, data, and all of its dependencies

We can use the following command to remove r-bioc-rsubread configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-bioc-rsubread

Dependencies

r-bioc-rsubread have the following dependencies:

References

Summary

In this tutorial we learn how to install r-bioc-rsubread package on Kali Linux using different package management tools: apt, apt-get and aptitude.