How To Install r-bioc-rsubread on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-rsubread on Debian 12.
What is r-bioc-rsubread
r-bioc-rsubread is:
Alignment, quantification and analysis of second and third generation sequencing data. Includes functionality for read mapping, read counting, SNP calling, structural variant detection and gene fusion discovery.
Can be applied to all major sequencing techologies and to both short and long sequence reads.
There are three methods to install r-bioc-rsubread on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-rsubread Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-rsubread using apt-get by running the following command:
sudo apt-get -y install r-bioc-rsubread
Install r-bioc-rsubread Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-rsubread using apt by running the following command:
sudo apt -y install r-bioc-rsubread
Install r-bioc-rsubread Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-rsubread using aptitude by running the following command:
sudo aptitude -y install r-bioc-rsubread
How To Uninstall r-bioc-rsubread on Debian 12
To uninstall only the r-bioc-rsubread package we can use the following command:
sudo apt-get remove r-bioc-rsubread
Uninstall r-bioc-rsubread And Its Dependencies
To uninstall r-bioc-rsubread and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-rsubread
Remove r-bioc-rsubread Configurations and Data
To remove r-bioc-rsubread configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-rsubread
Remove r-bioc-rsubread configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-rsubread configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-rsubread
Dependencies
r-bioc-rsubread have the following dependencies:
References
Summary
In this tutorial we learn how to install r-bioc-rsubread package on Debian 12 using different package management tools: apt, apt-get and aptitude.
