How To Install r-bioc-rhdf5filters on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-rhdf5filters on Debian 12.
What is r-bioc-rhdf5filters
r-bioc-rhdf5filters is:
This Bioconductor package provides a collection of compression filters for use with HDF5 datasets.
One of the advantages of using HDF5 is that data stored on disk can be compressed, reducing both the space required to store them and the time needed to read those data. This data compression is applied as part of the HDF5 ??filter pipeline?? that modifies data during I/O operations. HDF5 includes several filter algorithms as standard, and the version of the HDF5 library found in Rhdf5lib is additionally compiled with support for the deflate and szip compression filters which rely on third-party compression libraries. Collectively HDF5 refer to these as the ??internal?? filters. It is possible to use any combination of these (including none) when writing data using rhdf5.
There are three methods to install r-bioc-rhdf5filters on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-rhdf5filters Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-rhdf5filters using apt-get by running the following command:
sudo apt-get -y install r-bioc-rhdf5filters
Install r-bioc-rhdf5filters Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-rhdf5filters using apt by running the following command:
sudo apt -y install r-bioc-rhdf5filters
Install r-bioc-rhdf5filters Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-rhdf5filters using aptitude by running the following command:
sudo aptitude -y install r-bioc-rhdf5filters
How To Uninstall r-bioc-rhdf5filters on Debian 12
To uninstall only the r-bioc-rhdf5filters package we can use the following command:
sudo apt-get remove r-bioc-rhdf5filters
Uninstall r-bioc-rhdf5filters And Its Dependencies
To uninstall r-bioc-rhdf5filters and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-rhdf5filters
Remove r-bioc-rhdf5filters Configurations and Data
To remove r-bioc-rhdf5filters configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-rhdf5filters
Remove r-bioc-rhdf5filters configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-rhdf5filters configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-rhdf5filters
Dependencies
r-bioc-rhdf5filters have the following dependencies:
References
Summary
In this tutorial we learn how to install r-bioc-rhdf5filters package on Debian 12 using different package management tools: apt, apt-get and aptitude.
