How To Install r-bioc-phyloseq on Kali Linux

In this tutorial we learn how to install r-bioc-phyloseq on Kali Linux. r-bioc-phyloseq is GNU R handling and analysis of high-throughput microbiome census data

Introduction

In this tutorial we learn how to install r-bioc-phyloseq on Kali Linux.

What is `r-bioc-phyloseq`

r-bioc-phyloseq is:

The Bioconductor module phyloseq provides a set of classes and tools to facilitate the import, storage, analysis, and graphical display of microbiome census data.

There are three methods to install r-bioc-phyloseq on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-bioc-phyloseq Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-bioc-phyloseq using apt-get by running the following command:

sudo apt-get -y install r-bioc-phyloseq

Install r-bioc-phyloseq Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-bioc-phyloseq using apt by running the following command:

sudo apt -y install r-bioc-phyloseq

Install r-bioc-phyloseq Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-bioc-phyloseq using aptitude by running the following command:

sudo aptitude -y install r-bioc-phyloseq

How To Uninstall r-bioc-phyloseq on Kali Linux

To uninstall only the r-bioc-phyloseq package we can use the following command:

sudo apt-get remove r-bioc-phyloseq

Uninstall r-bioc-phyloseq And Its Dependencies

To uninstall r-bioc-phyloseq and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove r-bioc-phyloseq

Remove r-bioc-phyloseq Configurations and Data

To remove r-bioc-phyloseq configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge r-bioc-phyloseq

Remove r-bioc-phyloseq configuration, data, and all of its dependencies

We can use the following command to remove r-bioc-phyloseq configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-bioc-phyloseq

Dependencies

r-bioc-phyloseq have the following dependencies:

References

r-bioc-phyloseq website

Summary

In this tutorial we learn how to install r-bioc-phyloseq package on Kali Linux using different package management tools: apt, apt-get and aptitude.