How To Install r-bioc-organismdbi on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-organismdbi on Debian 12.
What is r-bioc-organismdbi
r-bioc-organismdbi is:
The package enables a simple unified interface to several annotation packages each of which has its own schema by taking advantage of the fact that each of these packages implements a select methods.
There are three methods to install r-bioc-organismdbi on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-organismdbi Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-organismdbi using apt-get by running the following command:
sudo apt-get -y install r-bioc-organismdbi
Install r-bioc-organismdbi Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-organismdbi using apt by running the following command:
sudo apt -y install r-bioc-organismdbi
Install r-bioc-organismdbi Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-organismdbi using aptitude by running the following command:
sudo aptitude -y install r-bioc-organismdbi
How To Uninstall r-bioc-organismdbi on Debian 12
To uninstall only the r-bioc-organismdbi package we can use the following command:
sudo apt-get remove r-bioc-organismdbi
Uninstall r-bioc-organismdbi And Its Dependencies
To uninstall r-bioc-organismdbi and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-organismdbi
Remove r-bioc-organismdbi Configurations and Data
To remove r-bioc-organismdbi configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-organismdbi
Remove r-bioc-organismdbi configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-organismdbi configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-organismdbi
Dependencies
r-bioc-organismdbi have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.16
- r-bioc-biocgenerics
- r-bioc-annotationdbi
- r-bioc-genomicfeatures
- r-bioc-biobase
- r-cran-biocmanager
- r-bioc-genomicranges
- r-bioc-graph
- r-bioc-iranges
- r-bioc-rbgl
- r-cran-dbi
- r-bioc-s4vectors
References
Summary
In this tutorial we learn how to install r-bioc-organismdbi package on Debian 12 using different package management tools: apt, apt-get and aptitude.
