How To Install r-bioc-oligoclasses on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-oligoclasses on Debian 12.
What is r-bioc-oligoclasses
r-bioc-oligoclasses is:
This package contains class definitions, validity checks, and initialization methods for classes used by the oligo and crlmm packages.
There are three methods to install r-bioc-oligoclasses on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-oligoclasses Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-oligoclasses using apt-get by running the following command:
sudo apt-get -y install r-bioc-oligoclasses
Install r-bioc-oligoclasses Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-oligoclasses using apt by running the following command:
sudo apt -y install r-bioc-oligoclasses
Install r-bioc-oligoclasses Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-oligoclasses using aptitude by running the following command:
sudo aptitude -y install r-bioc-oligoclasses
How To Uninstall r-bioc-oligoclasses on Debian 12
To uninstall only the r-bioc-oligoclasses package we can use the following command:
sudo apt-get remove r-bioc-oligoclasses
Uninstall r-bioc-oligoclasses And Its Dependencies
To uninstall r-bioc-oligoclasses and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-oligoclasses
Remove r-bioc-oligoclasses Configurations and Data
To remove r-bioc-oligoclasses configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-oligoclasses
Remove r-bioc-oligoclasses configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-oligoclasses configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-oligoclasses
Dependencies
r-bioc-oligoclasses have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.16
- r-bioc-biocgenerics
- r-bioc-biobase
- r-bioc-iranges
- r-bioc-genomicranges
- r-bioc-summarizedexperiment
- r-bioc-biostrings
- r-bioc-affyio
- r-cran-foreach
- r-cran-biocmanager
- r-bioc-s4vectors
- r-cran-rsqlite
- r-cran-dbi
- r-cran-ff
References
Summary
In this tutorial we learn how to install r-bioc-oligoclasses package on Debian 12 using different package management tools: apt, apt-get and aptitude.
