How To Install r-bioc-multiassayexperiment on Debian 11
Introduction
In this tutorial we learn how to install r-bioc-multiassayexperiment on Debian 11.
What is r-bioc-multiassayexperiment
r-bioc-multiassayexperiment is:
MultiAssayExperiment harmonizes data management of multiple assays performed on an overlapping set of specimens. It provides a familiar Bioconductor user experience by extending concepts from SummarizedExperiment, supporting an open-ended mix of standard data classes for individual assays, and allowing subsetting by genomic ranges or rownames.
There are three methods to install r-bioc-multiassayexperiment on Debian 11. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-multiassayexperiment Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-multiassayexperiment using apt-get by running the following command:
sudo apt-get -y install r-bioc-multiassayexperiment
Install r-bioc-multiassayexperiment Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-multiassayexperiment using apt by running the following command:
sudo apt -y install r-bioc-multiassayexperiment
Install r-bioc-multiassayexperiment Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-multiassayexperiment using aptitude by running the following command:
sudo aptitude -y install r-bioc-multiassayexperiment
How To Uninstall r-bioc-multiassayexperiment on Debian 11
To uninstall only the r-bioc-multiassayexperiment package we can use the following command:
sudo apt-get remove r-bioc-multiassayexperiment
Uninstall r-bioc-multiassayexperiment And Its Dependencies
To uninstall r-bioc-multiassayexperiment and its dependencies that are no longer needed by Debian 11, we can use the command below:
sudo apt-get -y autoremove r-bioc-multiassayexperiment
Remove r-bioc-multiassayexperiment Configurations and Data
To remove r-bioc-multiassayexperiment configuration and data from Debian 11 we can use the following command:
sudo apt-get -y purge r-bioc-multiassayexperiment
Remove r-bioc-multiassayexperiment configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-multiassayexperiment configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-multiassayexperiment
Dependencies
r-bioc-multiassayexperiment have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.12
- r-bioc-summarizedexperiment
- r-bioc-genomicranges
- r-bioc-biocgenerics
- r-bioc-s4vectors
- r-bioc-iranges
- r-bioc-biobase
- r-cran-tidyr
References
Summary
In this tutorial we learn how to install r-bioc-multiassayexperiment package on Debian 11 using different package management tools: apt, apt-get and aptitude.