How To Install r-bioc-monocle on Debian 12

Learn how to install r-bioc-monocle on Debian 12 with this tutorial. r-bioc-monocle is clustering, differential expression, and trajectory analysis for RNA-Seq

Introduction

In this tutorial we learn how to install r-bioc-monocle on Debian 12.

What is r-bioc-monocle

r-bioc-monocle is:

Monocle performs differential expression and time-series analysis for single-cell expression experiments. It orders individual cells according to progress through a biological process, without knowing ahead of time which genes define progress through that process. Monocle also performs differential expression analysis, clustering, visualization, and other useful tasks on single cell expression data. It is designed to work with RNA-Seq and qPCR data, but could be used with other types as well.

There are three methods to install r-bioc-monocle on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-bioc-monocle Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-bioc-monocle using apt-get by running the following command:

sudo apt-get -y install r-bioc-monocle

Install r-bioc-monocle Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-bioc-monocle using apt by running the following command:

sudo apt -y install r-bioc-monocle

Install r-bioc-monocle Using aptitude

If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-bioc-monocle using aptitude by running the following command:

sudo aptitude -y install r-bioc-monocle

How To Uninstall r-bioc-monocle on Debian 12

To uninstall only the r-bioc-monocle package we can use the following command:

sudo apt-get remove r-bioc-monocle

Uninstall r-bioc-monocle And Its Dependencies

To uninstall r-bioc-monocle and its dependencies that are no longer needed by Debian 12, we can use the command below:

sudo apt-get -y autoremove r-bioc-monocle

Remove r-bioc-monocle Configurations and Data

To remove r-bioc-monocle configuration and data from Debian 12 we can use the following command:

sudo apt-get -y purge r-bioc-monocle

Remove r-bioc-monocle configuration, data, and all of its dependencies

We can use the following command to remove r-bioc-monocle configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-bioc-monocle

Dependencies

r-bioc-monocle have the following dependencies:

References

Summary

In this tutorial we learn how to install r-bioc-monocle package on Debian 12 using different package management tools: apt, apt-get and aptitude.