How To Install r-bioc-metagenomeseq on Ubuntu 18.04
Introduction
In this tutorial we learn how to install r-bioc-metagenomeseq on Ubuntu 18.04.
What is r-bioc-metagenomeseq
r-bioc-metagenomeseq is:
MetagenomeSeq is designed to determine features (be it Operational Taxanomic Unit (OTU), species, etc.) that are differentially abundant between two or more groups of multiple samples. metagenomeSeq is designed to address the effects of both normalization and under-sampling of microbial communities on disease association detection and the testing of feature correlations.
There are three methods to install r-bioc-metagenomeseq on Ubuntu 18.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-metagenomeseq Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-metagenomeseq using apt-get by running the following command:
sudo apt-get -y install r-bioc-metagenomeseq
Install r-bioc-metagenomeseq Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-metagenomeseq using apt by running the following command:
sudo apt -y install r-bioc-metagenomeseq
Install r-bioc-metagenomeseq Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-metagenomeseq using aptitude by running the following command:
sudo aptitude -y install r-bioc-metagenomeseq
How To Uninstall r-bioc-metagenomeseq on Ubuntu 18.04
To uninstall only the r-bioc-metagenomeseq package we can use the following command:
sudo apt-get remove r-bioc-metagenomeseq
Uninstall r-bioc-metagenomeseq And Its Dependencies
To uninstall r-bioc-metagenomeseq and its dependencies that are no longer needed by Ubuntu 18.04, we can use the command below:
sudo apt-get -y autoremove r-bioc-metagenomeseq
Remove r-bioc-metagenomeseq Configurations and Data
To remove r-bioc-metagenomeseq configuration and data from Ubuntu 18.04 we can use the following command:
sudo apt-get -y purge r-bioc-metagenomeseq
Remove r-bioc-metagenomeseq configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-metagenomeseq configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-metagenomeseq
References
Summary
In this tutorial we learn how to install r-bioc-metagenomeseq package on Ubuntu 18.04 using different package management tools: apt, apt-get and aptitude.
