How To Install r-bioc-metagenomeseq on Kali Linux
Introduction
In this tutorial we learn how to install r-bioc-metagenomeseq
on Kali Linux.
What is r-bioc-metagenomeseq
r-bioc-metagenomeseq is:
MetagenomeSeq is designed to determine features (be it Operational Taxanomic Unit (OTU), species, etc.) that are differentially abundant between two or more groups of multiple samples. metagenomeSeq is designed to address the effects of both normalization and under-sampling of microbial communities on disease association detection and the testing of feature correlations.
There are three methods to install r-bioc-metagenomeseq
on Kali Linux. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-metagenomeseq Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-metagenomeseq
using apt-get
by running the following command:
sudo apt-get -y install r-bioc-metagenomeseq
Install r-bioc-metagenomeseq Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install r-bioc-metagenomeseq
using apt
by running the following command:
sudo apt -y install r-bioc-metagenomeseq
Install r-bioc-metagenomeseq Using aptitude
If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-metagenomeseq
using aptitude
by running the following command:
sudo aptitude -y install r-bioc-metagenomeseq
How To Uninstall r-bioc-metagenomeseq on Kali Linux
To uninstall only the r-bioc-metagenomeseq
package we can use the following command:
sudo apt-get remove r-bioc-metagenomeseq
Uninstall r-bioc-metagenomeseq And Its Dependencies
To uninstall r-bioc-metagenomeseq
and its dependencies that are no longer needed by Kali Linux, we can use the command below:
sudo apt-get -y autoremove r-bioc-metagenomeseq
Remove r-bioc-metagenomeseq Configurations and Data
To remove r-bioc-metagenomeseq
configuration and data from Kali Linux we can use the following command:
sudo apt-get -y purge r-bioc-metagenomeseq
Remove r-bioc-metagenomeseq configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-metagenomeseq
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-metagenomeseq
Dependencies
r-bioc-metagenomeseq have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.12
- r-bioc-biobase
- r-bioc-limma
- r-cran-glmnet
- r-cran-rcolorbrewer
- r-cran-matrixstats
- r-cran-foreach
- r-cran-matrix
- r-cran-gplots
- r-bioc-wrench
References
Summary
In this tutorial we learn how to install r-bioc-metagenomeseq
package on Kali Linux using different package management tools: apt
, apt-get
and aptitude
.