How To Install r-bioc-mergeomics on Ubuntu 22.04
Introduction
In this tutorial we learn how to install r-bioc-mergeomics
on Ubuntu 22.04.
What is r-bioc-mergeomics
r-bioc-mergeomics is:
The Mergeomics pipeline serves as a flexible framework for integrating multidimensional omics-disease associations, functional genomics, canonical pathways and gene-gene interaction networks to generate mechanistic hypotheses. It includes two main parts:
- Marker set enrichment analysis (MSEA);
- Weighted Key Driver Analysis (wKDA).
There are three methods to install r-bioc-mergeomics
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-mergeomics Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-mergeomics
using apt-get
by running the following command:
sudo apt-get -y install r-bioc-mergeomics
Install r-bioc-mergeomics Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install r-bioc-mergeomics
using apt
by running the following command:
sudo apt -y install r-bioc-mergeomics
Install r-bioc-mergeomics Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-mergeomics
using aptitude
by running the following command:
sudo aptitude -y install r-bioc-mergeomics
How To Uninstall r-bioc-mergeomics on Ubuntu 22.04
To uninstall only the r-bioc-mergeomics
package we can use the following command:
sudo apt-get remove r-bioc-mergeomics
Uninstall r-bioc-mergeomics And Its Dependencies
To uninstall r-bioc-mergeomics
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove r-bioc-mergeomics
Remove r-bioc-mergeomics Configurations and Data
To remove r-bioc-mergeomics
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge r-bioc-mergeomics
Remove r-bioc-mergeomics configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-mergeomics
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-mergeomics
References
Summary
In this tutorial we learn how to install r-bioc-mergeomics
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.