How To Install r-bioc-htsfilter on Kali Linux

In this tutorial we learn how to install r-bioc-htsfilter on Kali Linux. r-bioc-htsfilter is GNU R filter replicated high-throughput transcriptome sequencing data

Introduction

In this tutorial we learn how to install r-bioc-htsfilter on Kali Linux.

What is r-bioc-htsfilter

r-bioc-htsfilter is:

This package implements a filtering procedure for replicated transcriptome sequencing data based on a global Jaccard similarity index in order to identify genes with low, constant levels of expression across one or more experimental conditions.

There are three methods to install r-bioc-htsfilter on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-bioc-htsfilter Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-bioc-htsfilter using apt-get by running the following command:

sudo apt-get -y install r-bioc-htsfilter

Install r-bioc-htsfilter Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-bioc-htsfilter using apt by running the following command:

sudo apt -y install r-bioc-htsfilter

Install r-bioc-htsfilter Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-bioc-htsfilter using aptitude by running the following command:

sudo aptitude -y install r-bioc-htsfilter

How To Uninstall r-bioc-htsfilter on Kali Linux

To uninstall only the r-bioc-htsfilter package we can use the following command:

sudo apt-get remove r-bioc-htsfilter

Uninstall r-bioc-htsfilter And Its Dependencies

To uninstall r-bioc-htsfilter and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove r-bioc-htsfilter

Remove r-bioc-htsfilter Configurations and Data

To remove r-bioc-htsfilter configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge r-bioc-htsfilter

Remove r-bioc-htsfilter configuration, data, and all of its dependencies

We can use the following command to remove r-bioc-htsfilter configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-bioc-htsfilter

Dependencies

r-bioc-htsfilter have the following dependencies:

References

Summary

In this tutorial we learn how to install r-bioc-htsfilter package on Kali Linux using different package management tools: apt, apt-get and aptitude.