How To Install r-bioc-goseq on Kali Linux

In this tutorial we learn how to install r-bioc-goseq on Kali Linux. r-bioc-goseq is GNU R gene ontology analyser for RNA-seq and other length biased data

Introduction

In this tutorial we learn how to install r-bioc-goseq on Kali Linux.

What is r-bioc-goseq

r-bioc-goseq is:

This GNU R package provides functions to detect Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data.

There are three methods to install r-bioc-goseq on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-bioc-goseq Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-bioc-goseq using apt-get by running the following command:

sudo apt-get -y install r-bioc-goseq

Install r-bioc-goseq Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-bioc-goseq using apt by running the following command:

sudo apt -y install r-bioc-goseq

Install r-bioc-goseq Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-bioc-goseq using aptitude by running the following command:

sudo aptitude -y install r-bioc-goseq

How To Uninstall r-bioc-goseq on Kali Linux

To uninstall only the r-bioc-goseq package we can use the following command:

sudo apt-get remove r-bioc-goseq

Uninstall r-bioc-goseq And Its Dependencies

To uninstall r-bioc-goseq and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove r-bioc-goseq

Remove r-bioc-goseq Configurations and Data

To remove r-bioc-goseq configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge r-bioc-goseq

Remove r-bioc-goseq configuration, data, and all of its dependencies

We can use the following command to remove r-bioc-goseq configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-bioc-goseq

Dependencies

r-bioc-goseq have the following dependencies:

References

Summary

In this tutorial we learn how to install r-bioc-goseq package on Kali Linux using different package management tools: apt, apt-get and aptitude.