How To Install r-bioc-gosemsim on Kali Linux

In this tutorial we learn how to install r-bioc-gosemsim on Kali Linux. r-bioc-gosemsim is GO-terms semantic similarity measures

Introduction

In this tutorial we learn how to install r-bioc-gosemsim on Kali Linux.

What is r-bioc-gosemsim

r-bioc-gosemsim is:

The semantic comparisons of Gene Ontology (GO) annotations provide quantitative ways to compute similarities between genes and gene groups, and have became important basis for many bioinformatics analysis approaches. GOSemSim is an R package for semantic similarity computation among GO terms, sets of GO terms, gene products and gene clusters. GOSemSim implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively.

There are three methods to install r-bioc-gosemsim on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-bioc-gosemsim Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-bioc-gosemsim using apt-get by running the following command:

sudo apt-get -y install r-bioc-gosemsim

Install r-bioc-gosemsim Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-bioc-gosemsim using apt by running the following command:

sudo apt -y install r-bioc-gosemsim

Install r-bioc-gosemsim Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-bioc-gosemsim using aptitude by running the following command:

sudo aptitude -y install r-bioc-gosemsim

How To Uninstall r-bioc-gosemsim on Kali Linux

To uninstall only the r-bioc-gosemsim package we can use the following command:

sudo apt-get remove r-bioc-gosemsim

Uninstall r-bioc-gosemsim And Its Dependencies

To uninstall r-bioc-gosemsim and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove r-bioc-gosemsim

Remove r-bioc-gosemsim Configurations and Data

To remove r-bioc-gosemsim configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge r-bioc-gosemsim

Remove r-bioc-gosemsim configuration, data, and all of its dependencies

We can use the following command to remove r-bioc-gosemsim configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-bioc-gosemsim

Dependencies

r-bioc-gosemsim have the following dependencies:

References

Summary

In this tutorial we learn how to install r-bioc-gosemsim package on Kali Linux using different package management tools: apt, apt-get and aptitude.