How To Install r-bioc-gosemsim on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-gosemsim
on Debian 12.
What is r-bioc-gosemsim
r-bioc-gosemsim is:
The semantic comparisons of Gene Ontology (GO) annotations provide quantitative ways to compute similarities between genes and gene groups, and have became important basis for many bioinformatics analysis approaches. GOSemSim is an R package for semantic similarity computation among GO terms, sets of GO terms, gene products and gene clusters. GOSemSim implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively.
There are three methods to install r-bioc-gosemsim
on Debian 12. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-gosemsim Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-gosemsim
using apt-get
by running the following command:
sudo apt-get -y install r-bioc-gosemsim
Install r-bioc-gosemsim Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install r-bioc-gosemsim
using apt
by running the following command:
sudo apt -y install r-bioc-gosemsim
Install r-bioc-gosemsim Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-gosemsim
using aptitude
by running the following command:
sudo aptitude -y install r-bioc-gosemsim
How To Uninstall r-bioc-gosemsim on Debian 12
To uninstall only the r-bioc-gosemsim
package we can use the following command:
sudo apt-get remove r-bioc-gosemsim
Uninstall r-bioc-gosemsim And Its Dependencies
To uninstall r-bioc-gosemsim
and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-gosemsim
Remove r-bioc-gosemsim Configurations and Data
To remove r-bioc-gosemsim
configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-gosemsim
Remove r-bioc-gosemsim configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-gosemsim
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-gosemsim
Dependencies
r-bioc-gosemsim have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.16
- r-bioc-annotationdbi
- r-bioc-go.db
- r-cran-rcpp
- libc6
- libgcc-s1
- libstdc++6
References
Summary
In this tutorial we learn how to install r-bioc-gosemsim
package on Debian 12 using different package management tools: apt
, apt-get
and aptitude
.