How To Install r-bioc-glmgampoi on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-glmgampoi on Debian 12.
What is r-bioc-glmgampoi
r-bioc-glmgampoi is:
Fit linear models to overdispersed count data. The package can estimate the overdispersion and fit repeated models for matrix input. It is designed to handle large input datasets as they typically occur in single cell RNA-seq experiments.
There are three methods to install r-bioc-glmgampoi on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-glmgampoi Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-glmgampoi using apt-get by running the following command:
sudo apt-get -y install r-bioc-glmgampoi
Install r-bioc-glmgampoi Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-glmgampoi using apt by running the following command:
sudo apt -y install r-bioc-glmgampoi
Install r-bioc-glmgampoi Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-glmgampoi using aptitude by running the following command:
sudo aptitude -y install r-bioc-glmgampoi
How To Uninstall r-bioc-glmgampoi on Debian 12
To uninstall only the r-bioc-glmgampoi package we can use the following command:
sudo apt-get remove r-bioc-glmgampoi
Uninstall r-bioc-glmgampoi And Its Dependencies
To uninstall r-bioc-glmgampoi and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-glmgampoi
Remove r-bioc-glmgampoi Configurations and Data
To remove r-bioc-glmgampoi configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-glmgampoi
Remove r-bioc-glmgampoi configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-glmgampoi configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-glmgampoi
Dependencies
r-bioc-glmgampoi have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.16
- r-cran-rcpp
- r-bioc-delayedmatrixstats
- r-cran-matrixstats
- r-bioc-matrixgenerics
- r-bioc-delayedarray
- r-bioc-hdf5array
- r-bioc-summarizedexperiment
- r-bioc-singlecellexperiment
- r-bioc-biocgenerics
- r-cran-rlang
- r-cran-rcpparmadillo
- r-bioc-beachmat
- libblas3
- libc6
- libgcc-s1
- liblapack3
- libstdc++6
References
Summary
In this tutorial we learn how to install r-bioc-glmgampoi package on Debian 12 using different package management tools: apt, apt-get and aptitude.
