How To Install r-bioc-geoquery on Kali Linux

Introduction

In this tutorial we learn how to install r-bioc-geoquery on Kali Linux.

What is r-bioc-geoquery

r-bioc-geoquery is:

The NCBI Gene Expression Omnibus (GEO) is a public repository of microarray data. Given the rich and varied nature of this resource, it is only natural to want to apply BioConductor tools to these data. GEOquery is the bridge between GEO and BioConductor.

There are three methods to install r-bioc-geoquery on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-bioc-geoquery Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-bioc-geoquery using apt-get by running the following command:

sudo apt-get -y install r-bioc-geoquery

Install r-bioc-geoquery Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-bioc-geoquery using apt by running the following command:

sudo apt -y install r-bioc-geoquery

Install r-bioc-geoquery Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-bioc-geoquery using aptitude by running the following command:

sudo aptitude -y install r-bioc-geoquery

How To Uninstall r-bioc-geoquery on Kali Linux

To uninstall only the r-bioc-geoquery package we can use the following command:

sudo apt-get remove r-bioc-geoquery

Uninstall r-bioc-geoquery And Its Dependencies

To uninstall r-bioc-geoquery and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove r-bioc-geoquery

Remove r-bioc-geoquery Configurations and Data

To remove r-bioc-geoquery configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge r-bioc-geoquery

Remove r-bioc-geoquery configuration, data, and all of its dependencies

We can use the following command to remove r-bioc-geoquery configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-bioc-geoquery

Dependencies

r-bioc-geoquery have the following dependencies:

• r-base-core
• r-api-4.0
• r-api-bioc-3.12
• r-bioc-biobase
• r-cran-httr
• r-cran-readr
• r-cran-xml2
• r-cran-dplyr
• r-cran-tidyr
• r-cran-magrittr
• r-bioc-limma

References

• r-bioc-geoquery website

Summary

In this tutorial we learn how to install r-bioc-geoquery package on Kali Linux using different package management tools: apt, apt-get and aptitude.