How To Install r-bioc-geoquery on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-geoquery on Debian 12.
What is r-bioc-geoquery
r-bioc-geoquery is:
The NCBI Gene Expression Omnibus (GEO) is a public repository of microarray data. Given the rich and varied nature of this resource, it is only natural to want to apply BioConductor tools to these data. GEOquery is the bridge between GEO and BioConductor.
There are three methods to install r-bioc-geoquery on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-geoquery Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-geoquery using apt-get by running the following command:
sudo apt-get -y install r-bioc-geoquery
Install r-bioc-geoquery Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-geoquery using apt by running the following command:
sudo apt -y install r-bioc-geoquery
Install r-bioc-geoquery Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-geoquery using aptitude by running the following command:
sudo aptitude -y install r-bioc-geoquery
How To Uninstall r-bioc-geoquery on Debian 12
To uninstall only the r-bioc-geoquery package we can use the following command:
sudo apt-get remove r-bioc-geoquery
Uninstall r-bioc-geoquery And Its Dependencies
To uninstall r-bioc-geoquery and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-geoquery
Remove r-bioc-geoquery Configurations and Data
To remove r-bioc-geoquery configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-geoquery
Remove r-bioc-geoquery configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-geoquery configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-geoquery
Dependencies
r-bioc-geoquery have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.16
- r-bioc-biobase
- r-cran-readr
- r-cran-xml2
- r-cran-dplyr
- r-cran-data.table
- r-cran-tidyr
- r-cran-magrittr
- r-bioc-limma
- r-cran-curl
- r-cran-r.utils
References
Summary
In this tutorial we learn how to install r-bioc-geoquery package on Debian 12 using different package management tools: apt, apt-get and aptitude.
