How To Install r-bioc-genomicranges on Kali Linux

In this tutorial we learn how to install r-bioc-genomicranges on Kali Linux. r-bioc-genomicranges is BioConductor representation and manipulation of genomic intervals

Introduction

In this tutorial we learn how to install r-bioc-genomicranges on Kali Linux.

What is r-bioc-genomicranges

r-bioc-genomicranges is:

The ability to efficiently store genomic annotations and alignments is playing a central role when it comes to analyze high-throughput sequencing data (a.k.a. NGS data). The package defines general purpose containers for storing genomic intervals as well as more specialized containers for storing alignments against a reference genome.

There are three methods to install r-bioc-genomicranges on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-bioc-genomicranges Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-bioc-genomicranges using apt-get by running the following command:

sudo apt-get -y install r-bioc-genomicranges

Install r-bioc-genomicranges Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-bioc-genomicranges using apt by running the following command:

sudo apt -y install r-bioc-genomicranges

Install r-bioc-genomicranges Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-bioc-genomicranges using aptitude by running the following command:

sudo aptitude -y install r-bioc-genomicranges

How To Uninstall r-bioc-genomicranges on Kali Linux

To uninstall only the r-bioc-genomicranges package we can use the following command:

sudo apt-get remove r-bioc-genomicranges

Uninstall r-bioc-genomicranges And Its Dependencies

To uninstall r-bioc-genomicranges and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove r-bioc-genomicranges

Remove r-bioc-genomicranges Configurations and Data

To remove r-bioc-genomicranges configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge r-bioc-genomicranges

Remove r-bioc-genomicranges configuration, data, and all of its dependencies

We can use the following command to remove r-bioc-genomicranges configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-bioc-genomicranges

Dependencies

r-bioc-genomicranges have the following dependencies:

References

Summary

In this tutorial we learn how to install r-bioc-genomicranges package on Kali Linux using different package management tools: apt, apt-get and aptitude.