How To Install r-bioc-genomicfiles on Kali Linux
Introduction
In this tutorial we learn how to install r-bioc-genomicfiles on Kali Linux.
What is r-bioc-genomicfiles
r-bioc-genomicfiles is:
This package provides infrastructure for parallel computations distributed ‘by file’ or ‘by range’. User defined MAPPER and REDUCER functions provide added flexibility for data combination and manipulation.
There are three methods to install r-bioc-genomicfiles on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-genomicfiles Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get updateAfter updating apt database, We can install r-bioc-genomicfiles using apt-get by running the following command:
sudo apt-get -y install r-bioc-genomicfilesInstall r-bioc-genomicfiles Using apt
Update apt database with apt using the following command.
sudo apt updateAfter updating apt database, We can install r-bioc-genomicfiles using apt by running the following command:
sudo apt -y install r-bioc-genomicfilesInstall r-bioc-genomicfiles Using aptitude
If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.
sudo aptitude updateAfter updating apt database, We can install r-bioc-genomicfiles using aptitude by running the following command:
sudo aptitude -y install r-bioc-genomicfilesHow To Uninstall r-bioc-genomicfiles on Kali Linux
To uninstall only the r-bioc-genomicfiles package we can use the following command:
sudo apt-get remove r-bioc-genomicfilesUninstall r-bioc-genomicfiles And Its Dependencies
To uninstall r-bioc-genomicfiles and its dependencies that are no longer needed by Kali Linux, we can use the command below:
sudo apt-get -y autoremove r-bioc-genomicfilesRemove r-bioc-genomicfiles Configurations and Data
To remove r-bioc-genomicfiles configuration and data from Kali Linux we can use the following command:
sudo apt-get -y purge r-bioc-genomicfilesRemove r-bioc-genomicfiles configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-genomicfiles configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-genomicfilesDependencies
r-bioc-genomicfiles have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.12
- r-bioc-biocgenerics
- r-bioc-matrixgenerics
- r-bioc-genomicranges
- r-bioc-summarizedexperiment
- r-bioc-biocparallel
- r-bioc-rsamtools
- r-bioc-rtracklayer
- r-bioc-genomicalignments
- r-bioc-iranges
- r-bioc-s4vectors
- r-bioc-variantannotation
- r-bioc-genomeinfodb
References
Summary
In this tutorial we learn how to install r-bioc-genomicfiles package on Kali Linux using different package management tools: apt, apt-get and aptitude.