How To Install r-bioc-genomicfiles on Debian 11
Introduction
In this tutorial we learn how to install r-bioc-genomicfiles on Debian 11.
What is r-bioc-genomicfiles
r-bioc-genomicfiles is:
This package provides infrastructure for parallel computations distributed ‘by file’ or ‘by range’. User defined MAPPER and REDUCER functions provide added flexibility for data combination and manipulation.
There are three methods to install r-bioc-genomicfiles on Debian 11. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-genomicfiles Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-genomicfiles using apt-get by running the following command:
sudo apt-get -y install r-bioc-genomicfiles
Install r-bioc-genomicfiles Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-genomicfiles using apt by running the following command:
sudo apt -y install r-bioc-genomicfiles
Install r-bioc-genomicfiles Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-genomicfiles using aptitude by running the following command:
sudo aptitude -y install r-bioc-genomicfiles
How To Uninstall r-bioc-genomicfiles on Debian 11
To uninstall only the r-bioc-genomicfiles package we can use the following command:
sudo apt-get remove r-bioc-genomicfiles
Uninstall r-bioc-genomicfiles And Its Dependencies
To uninstall r-bioc-genomicfiles and its dependencies that are no longer needed by Debian 11, we can use the command below:
sudo apt-get -y autoremove r-bioc-genomicfiles
Remove r-bioc-genomicfiles Configurations and Data
To remove r-bioc-genomicfiles configuration and data from Debian 11 we can use the following command:
sudo apt-get -y purge r-bioc-genomicfiles
Remove r-bioc-genomicfiles configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-genomicfiles configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-genomicfiles
Dependencies
r-bioc-genomicfiles have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.12
- r-bioc-biocgenerics
- r-bioc-matrixgenerics
- r-bioc-genomicranges
- r-bioc-summarizedexperiment
- r-bioc-biocparallel
- r-bioc-rsamtools
- r-bioc-rtracklayer
- r-bioc-genomicalignments
- r-bioc-iranges
- r-bioc-s4vectors
- r-bioc-variantannotation
- r-bioc-genomeinfodb
References
Summary
In this tutorial we learn how to install r-bioc-genomicfiles package on Debian 11 using different package management tools: apt, apt-get and aptitude.