How To Install r-bioc-genomeinfodb on Debian 10
Introduction
In this tutorial we learn how to install r-bioc-genomeinfodb on Debian 10.
What is r-bioc-genomeinfodb
r-bioc-genomeinfodb is:
This package contains BioConductor utilities for manipulating chromosome and other ‘seqname’ identifiers.
The Seqnames package contains data and functions that define and allow translation between different chromosome sequence naming conventions (e.g., “chr1” versus “1”), including a function that attempts to place sequence names in their natural, rather than lexicographic, order.
There are three methods to install r-bioc-genomeinfodb on Debian 10. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-genomeinfodb Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-genomeinfodb using apt-get by running the following command:
sudo apt-get -y install r-bioc-genomeinfodb
Install r-bioc-genomeinfodb Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-genomeinfodb using apt by running the following command:
sudo apt -y install r-bioc-genomeinfodb
Install r-bioc-genomeinfodb Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-genomeinfodb using aptitude by running the following command:
sudo aptitude -y install r-bioc-genomeinfodb
How To Uninstall r-bioc-genomeinfodb on Debian 10
To uninstall only the r-bioc-genomeinfodb package we can use the following command:
sudo apt-get remove r-bioc-genomeinfodb
Uninstall r-bioc-genomeinfodb And Its Dependencies
To uninstall r-bioc-genomeinfodb and its dependencies that are no longer needed by Debian 10, we can use the command below:
sudo apt-get -y autoremove r-bioc-genomeinfodb
Remove r-bioc-genomeinfodb Configurations and Data
To remove r-bioc-genomeinfodb configuration and data from Debian 10 we can use the following command:
sudo apt-get -y purge r-bioc-genomeinfodb
Remove r-bioc-genomeinfodb configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-genomeinfodb configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-genomeinfodb
Dependencies
r-bioc-genomeinfodb have the following dependencies:
- r-base-core
- r-api-3.5
- r-bioc-biocgenerics
- r-bioc-s4vectors
- r-bioc-iranges
- r-cran-rcurl
- r-bioc-genomeinfodbdata
References
Summary
In this tutorial we learn how to install r-bioc-genomeinfodb package on Debian 10 using different package management tools: apt, apt-get and aptitude.