How To Install r-bioc-genefilter on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-genefilter on Debian 12.
What is r-bioc-genefilter
r-bioc-genefilter is:
This BioConductor module provides methods for filtering genes from microarray experiments. It contains some basic functions for filtering genes.
There are three methods to install r-bioc-genefilter on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-genefilter Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-genefilter using apt-get by running the following command:
sudo apt-get -y install r-bioc-genefilter
Install r-bioc-genefilter Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-genefilter using apt by running the following command:
sudo apt -y install r-bioc-genefilter
Install r-bioc-genefilter Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-genefilter using aptitude by running the following command:
sudo aptitude -y install r-bioc-genefilter
How To Uninstall r-bioc-genefilter on Debian 12
To uninstall only the r-bioc-genefilter package we can use the following command:
sudo apt-get remove r-bioc-genefilter
Uninstall r-bioc-genefilter And Its Dependencies
To uninstall r-bioc-genefilter and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-genefilter
Remove r-bioc-genefilter Configurations and Data
To remove r-bioc-genefilter configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-genefilter
Remove r-bioc-genefilter configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-genefilter configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-genefilter
Dependencies
r-bioc-genefilter have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.16
- r-bioc-biocgenerics
- r-bioc-annotationdbi
- r-bioc-annotate
- r-bioc-biobase
- r-cran-survival
- libc6
- libgcc-s1
- libstdc++6
References
Summary
In this tutorial we learn how to install r-bioc-genefilter package on Debian 12 using different package management tools: apt, apt-get and aptitude.