How To Install r-bioc-fmcsr on Kali Linux
Introduction
In this tutorial we learn how to install r-bioc-fmcsr
on Kali Linux.
What is r-bioc-fmcsr
r-bioc-fmcsr is:
The fmcsR package introduces an efficient maximum common substructure (MCS) algorithms combined with a novel matching strategy that allows for atom and/or bond mismatches in the substructures shared among two small molecules. The resulting flexible MCSs (FMCSs) are often larger than strict MCSs, resulting in the identification of more common features in their source structures, as well as a higher sensitivity in finding compounds with weak structural similarities. The fmcsR package provides several utilities to use the FMCS algorithm for pairwise compound comparisons, structure similarity searching and clustering.
There are three methods to install r-bioc-fmcsr
on Kali Linux. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-fmcsr Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-fmcsr
using apt-get
by running the following command:
sudo apt-get -y install r-bioc-fmcsr
Install r-bioc-fmcsr Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install r-bioc-fmcsr
using apt
by running the following command:
sudo apt -y install r-bioc-fmcsr
Install r-bioc-fmcsr Using aptitude
If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-fmcsr
using aptitude
by running the following command:
sudo aptitude -y install r-bioc-fmcsr
How To Uninstall r-bioc-fmcsr on Kali Linux
To uninstall only the r-bioc-fmcsr
package we can use the following command:
sudo apt-get remove r-bioc-fmcsr
Uninstall r-bioc-fmcsr And Its Dependencies
To uninstall r-bioc-fmcsr
and its dependencies that are no longer needed by Kali Linux, we can use the command below:
sudo apt-get -y autoremove r-bioc-fmcsr
Remove r-bioc-fmcsr Configurations and Data
To remove r-bioc-fmcsr
configuration and data from Kali Linux we can use the following command:
sudo apt-get -y purge r-bioc-fmcsr
Remove r-bioc-fmcsr configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-fmcsr
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-fmcsr
Dependencies
r-bioc-fmcsr have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.12
- r-bioc-chemminer
- r-cran-runit
- r-bioc-biocgenerics
- libc6
- libgcc-s1
- libstdc++6
References
Summary
In this tutorial we learn how to install r-bioc-fmcsr
package on Kali Linux using different package management tools: apt
, apt-get
and aptitude
.