How To Install r-bioc-fmcsr on Kali Linux

In this tutorial we learn how to install r-bioc-fmcsr on Kali Linux. r-bioc-fmcsr is GNU R mismatch tolerant maximum common substructure searching

Introduction

In this tutorial we learn how to install r-bioc-fmcsr on Kali Linux.

What is r-bioc-fmcsr

r-bioc-fmcsr is:

The fmcsR package introduces an efficient maximum common substructure (MCS) algorithms combined with a novel matching strategy that allows for atom and/or bond mismatches in the substructures shared among two small molecules. The resulting flexible MCSs (FMCSs) are often larger than strict MCSs, resulting in the identification of more common features in their source structures, as well as a higher sensitivity in finding compounds with weak structural similarities. The fmcsR package provides several utilities to use the FMCS algorithm for pairwise compound comparisons, structure similarity searching and clustering.

There are three methods to install r-bioc-fmcsr on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-bioc-fmcsr Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-bioc-fmcsr using apt-get by running the following command:

sudo apt-get -y install r-bioc-fmcsr

Install r-bioc-fmcsr Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-bioc-fmcsr using apt by running the following command:

sudo apt -y install r-bioc-fmcsr

Install r-bioc-fmcsr Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-bioc-fmcsr using aptitude by running the following command:

sudo aptitude -y install r-bioc-fmcsr

How To Uninstall r-bioc-fmcsr on Kali Linux

To uninstall only the r-bioc-fmcsr package we can use the following command:

sudo apt-get remove r-bioc-fmcsr

Uninstall r-bioc-fmcsr And Its Dependencies

To uninstall r-bioc-fmcsr and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove r-bioc-fmcsr

Remove r-bioc-fmcsr Configurations and Data

To remove r-bioc-fmcsr configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge r-bioc-fmcsr

Remove r-bioc-fmcsr configuration, data, and all of its dependencies

We can use the following command to remove r-bioc-fmcsr configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-bioc-fmcsr

Dependencies

r-bioc-fmcsr have the following dependencies:

References

Summary

In this tutorial we learn how to install r-bioc-fmcsr package on Kali Linux using different package management tools: apt, apt-get and aptitude.