How To Install r-bioc-experimenthub on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-experimenthub on Debian 12.
What is r-bioc-experimenthub
r-bioc-experimenthub is:
This package provides a client for the Bioconductor ExperimentHub web resource. ExperimentHub provides a central location where curated data from experiments, publications or training courses can be accessed. Each resource has associated metadata, tags and date of modification. The client creates and manages a local cache of files retrieved enabling quick and reproducible access.
There are three methods to install r-bioc-experimenthub on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-experimenthub Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-experimenthub using apt-get by running the following command:
sudo apt-get -y install r-bioc-experimenthub
Install r-bioc-experimenthub Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-experimenthub using apt by running the following command:
sudo apt -y install r-bioc-experimenthub
Install r-bioc-experimenthub Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-experimenthub using aptitude by running the following command:
sudo aptitude -y install r-bioc-experimenthub
How To Uninstall r-bioc-experimenthub on Debian 12
To uninstall only the r-bioc-experimenthub package we can use the following command:
sudo apt-get remove r-bioc-experimenthub
Uninstall r-bioc-experimenthub And Its Dependencies
To uninstall r-bioc-experimenthub and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-experimenthub
Remove r-bioc-experimenthub Configurations and Data
To remove r-bioc-experimenthub configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-experimenthub
Remove r-bioc-experimenthub configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-experimenthub configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-experimenthub
Dependencies
r-bioc-experimenthub have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.16
- r-bioc-biocgenerics
- r-bioc-annotationhub
- r-bioc-biocfilecache
- r-bioc-s4vectors
- r-cran-biocmanager
- r-cran-curl
- r-cran-rappdirs
References
Summary
In this tutorial we learn how to install r-bioc-experimenthub package on Debian 12 using different package management tools: apt, apt-get and aptitude.
