How To Install r-bioc-edaseq on Ubuntu 22.04
Introduction
In this tutorial we learn how to install r-bioc-edaseq
on Ubuntu 22.04.
What is r-bioc-edaseq
r-bioc-edaseq is:
Numerical and graphical summaries of RNA-Seq read data. Within-lane normalization procedures to adjust for GC-content effect (or other gene-level effects) on read counts: loess robust local regression, global-scaling, and full-quantile normalization (Risso et al., 2011). Between-lane normalization procedures to adjust for distributional differences between lanes (e.g., sequencing depth): global-scaling and full-quantile normalization (Bullard et al., 2010).
There are three methods to install r-bioc-edaseq
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-edaseq Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-edaseq
using apt-get
by running the following command:
sudo apt-get -y install r-bioc-edaseq
Install r-bioc-edaseq Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install r-bioc-edaseq
using apt
by running the following command:
sudo apt -y install r-bioc-edaseq
Install r-bioc-edaseq Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-edaseq
using aptitude
by running the following command:
sudo aptitude -y install r-bioc-edaseq
How To Uninstall r-bioc-edaseq on Ubuntu 22.04
To uninstall only the r-bioc-edaseq
package we can use the following command:
sudo apt-get remove r-bioc-edaseq
Uninstall r-bioc-edaseq And Its Dependencies
To uninstall r-bioc-edaseq
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove r-bioc-edaseq
Remove r-bioc-edaseq Configurations and Data
To remove r-bioc-edaseq
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge r-bioc-edaseq
Remove r-bioc-edaseq configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-edaseq
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-edaseq
References
Summary
In this tutorial we learn how to install r-bioc-edaseq
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.